bio_flutter 0.0.9

Cross-platform representation and visualization of biological data in flutter

0.0.9

• (BREAKING) Renaming "UMAP" to more general "Projection" term This includes the data class, the visualizer, file handling and test cases
• Updating dependencies

0.0.8

• Adding testing strategy
• Making toMap more generic for bio entities
• Adding toString function for sequence
• Adding preliminary OneHotEncodingEmbedder

0.0.7

• Adding TypeNameMixin for all biological entities to be able to display the class name at runtime, even for optimized types in flutter web renderer

0.0.6

Features

• Adding Cell and CellMeasurements data classes
• Adding CellFCSParser stub

Maintenance

• Changing bio_file_handler structure to be able to handle both string and binary file types (breaking changes for string converting and parsing)

0.0.5

Features

• Adding EmbeddingsCombiner Is able to combine two embeddings via a combining function, currently multiply elementwise and concatenation. Enables ProteinProteinInteraction to provide the getEmbeddings interface.
• Adding draft classes for AminoAcid and Atom to represent protein structure (work in progress)

Maintenance

• Multiple lines for sequences in protein fasta files are now allowed and concatenated
• File names are now automatically added to loaded entities (column name ExtractedDataset)
• Renaming BiologicalEntity to BioEntity
• Making nullableMerge applicable for non-comparable types
• Adding toMap() and getEmbeddings() to BioEntity interface
• Introducing functional error handling via fpdart, will be more widely adapted in future releases
• Moving package to biocentral organization
• Updating dependencies

0.0.4

Maintenance

• Fixing image path in README

0.0.3

Maintenance

• Fixing image path in README
• Renaming umap example to example.dart
• Fixing package description length

0.0.2

Maintenance

• Adding BSD License

0.0.1

Initial release

Features

Widgets:

• UMAP Visualizer

Biological Data Classes:

• Protein
• Sequence: AminoAcidSequence, NucleotideSequence
• Protein-Protein Interaction
• Taxonomy

Protein Representation and Data Analysis:

• Embedding: PerSequence, PerResidue
• UMAP

File handling:

• Protein: fasta
• ProteinProteinInteraction: fasta
• Embedding: json
• UMAPData: csv
• CustomAttributes: csv