NucleotideSequence class

Constructors

NucleotideSequence(String seq, {EnumNucleotideSequenceType type = EnumNucleotideSequenceType.dna, String? id, EnumNucleotideSequenceDirection direction = EnumNucleotideSequenceDirection.fiveToThree, String? description, Map<String, dynamic>? info, Map<String, NucleotideInfo>? nucleotideInfo})
  • seq : The base sequence. Only lowercase letters are allowed. Give the result of running toLowerCase() if it contains uppercase letters.
  • type : DNA or RNA.
  • id : This sequence id.
  • direction : sequence direction. 5'to3' or 3'to5'. This value is reversed for complemented objects.
  • description : The description of this sequence.
  • info : Other information of this sequence.
  • nucleotideInfo : Reference for information by nucleotide.
    • NucleotideSequence.fromSeq(List<Nucleotide> sequence, {EnumNucleotideSequenceType type = EnumNucleotideSequenceType.dna, String? id, EnumNucleotideSequenceDirection direction = EnumNucleotideSequenceDirection.fiveToThree, String? description, Map<String, dynamic>? info, Map<String, NucleotideInfo>? nucleotideInfo})
    Generate from sequence data.

    Properties

    description ↔ String?
    getter/setter pair
    direction ↔ EnumNucleotideSequenceDirection
    getter/setter pair
    hashCode → int
    The hash code for this object.
    no setterinherited
    id ↔ String?
    getter/setter pair
    info ↔ Map<String, dynamic>?
    getter/setter pair
    nucleotideInfo ↔ Map<String, NucleotideInfo>?
    getter/setter pair
    runtimeType → Type
    A representation of the runtime type of the object.
    no setterinherited
    sequence ↔ List<Nucleotide>
    getter/setter pair
    type ↔ EnumNucleotideSequenceType
    getter/setter pair

    Methods

    add(NucleotideSequence seq, {bool useDirection = true}) → void
    (en) Combines this NucleotideSequence with another NucleotideSequence.
    complemented(EnumNucleotideSequenceType type) → NucleotideSequence
    (en) Get the complementary sequence. Also, nucleotideInfo is returned as empty.
    converted(EnumNucleotideSequenceType type) → NucleotideSequence
    (en) Gets a new array whose type has been converted. Orientation does not change. Also, nucleotideInfo is returned as empty.
    deepCopy() → NucleotideSequence
    deep copy.
    length() → int
    Return sequence length.
    noSuchMethod(Invocation invocation) → dynamic
    Invoked when a nonexistent method or property is accessed.
    inherited
    reverse() → void
    (en) Reverses the order of bases in this Sequence.
    reversed() → NucleotideSequence
    (en) Gets a new reversed Sequence.
    subSeq(int startIndex, [int? endIndex]) → NucleotideSequence
    (en) Get a partial sequence. Data other than seq are copied.
    subSeqNonInfo(int startIndex, [int? endIndex]) → NucleotideSequence
    (en) Get a partial sequence. Data other than seq are not copied. Use this when speed is a priority.(e.g. UtilCompareNucleotide.compareBase) return info and nucleotideInfo will be null.
    toDict() → Map<String, dynamic>
    to map.
    toStr() → String
    (en)　It converts to a character string with only the base sequence(lowercase letter) and returns it. Direction is not considered.
    toString() → String
    A string representation of this object.
    inherited

    Operators

    operator +(NucleotideSequence seq) → NucleotideSequence
    operator ==(Object other) → bool
    The equality operator.
    inherited

    Static Methods

    fromDict(Map<String, dynamic> src) → NucleotideSequence
    resume map.

    Constants

    className → const String
    version → const String