GenomicStudyAnalysis class

GenomicStudyAnalysis A GenomicStudy is a set of analyses performed to analyze and generate genomic data.

Annotations
  • @freezed

Constructors

GenomicStudyAnalysis({@JsonKey(name: 'id') String? fhirId, @JsonKey(name: 'extension') List<FhirExtension>? extension_, List<FhirExtension>? modifierExtension, List<Identifier>? identifier, List<CodeableConcept>? methodType, List<CodeableConcept>? changeType, CodeableConcept? genomeBuild, FhirCanonical? instantiatesCanonical, FhirUri? instantiatesUri, @JsonKey(name: '_instantiatesUri') Element? instantiatesUriElement, String? title, @JsonKey(name: '_title') Element? titleElement, List<Reference>? focus, List<Reference>? specimen, FhirDateTime? date, @JsonKey(name: '_date') Element? dateElement, List<Annotation>? note, Reference? protocolPerformed, List<Reference>? regionsStudied, List<Reference>? regionsCalled, List<GenomicStudyInput>? input, List<GenomicStudyOutput>? output, List<GenomicStudyPerformer>? performer, List<GenomicStudyDevice>? device})
GenomicStudyAnalysis A GenomicStudy is a set of analyses performed to analyze and generate genomic data.
const
factory
GenomicStudyAnalysis.fromJson(Map<String, dynamic> json)
Factory constructor, accepts Map<String, dynamic> as an argument
factory
GenomicStudyAnalysis.fromJsonString(String source)
Acts like a constructor, returns a GenomicStudyAnalysis, accepts a String as an argument, mostly because I got tired of typing it out
factory
GenomicStudyAnalysis.fromYaml(dynamic yaml)
Factory constructor that accepts a String in YAML format as an argument
factory

Properties

changeType → List<CodeableConcept>?
changeType Type of the genomic changes studied in the analysis, e.g., DNA, RNA, or amino acid change.
no setterinherited
copyWith → $GenomicStudyAnalysisCopyWith<GenomicStudyAnalysis>
no setterinherited
date → FhirDateTime?
date The date of the analysis event.
no setterinherited
dateElement → Element?
dateElement ("_date") Extensions for date
no setterinherited
device → List<GenomicStudyDevice>?
device Devices used for the analysis (e.g., instruments, software), with settings and parameters.
no setterinherited
extension_ → List<FhirExtension>?
extension_ ("extension") May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and managable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.
no setterinherited
fhirId → String?
id Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.
no setterinherited
focus → List<Reference>?
focus The focus of a genomic analysis when it is not the patient of record representing something or someone associated with the patient such as a spouse, parent, child, or sibling. For example, in trio testing, the GenomicStudy.subject would be the child (proband) and the GenomicStudy.analysis.focus of a specific analysis would be the parent.
no setterinherited
genomeBuild → CodeableConcept?
genomeBuild The reference genome build that is used in this analysis.
no setterinherited
hashCode → int
The hash code for this object.
no setterinherited
identifier → List<Identifier>?
identifier Identifiers for the analysis event.
no setterinherited
input → List<GenomicStudyInput>?
input Inputs for the analysis event.
no setterinherited
instantiatesCanonical → FhirCanonical?
instantiatesCanonical The defined protocol that describes the analysis.
no setterinherited
instantiatesUri → FhirUri?
instantiatesUri The URL pointing to an externally maintained protocol that describes the analysis.
no setterinherited
instantiatesUriElement → Element?
instantiatesUriElement ("_instantiatesUri") Extensions for instantiatesUri
no setterinherited
methodType → List<CodeableConcept>?
methodType Type of the methods used in the analysis, e.g., Fluorescence in situ hybridization (FISH), Karyotyping, or Microsatellite instability testing (MSI).
no setterinherited
modifierExtension → List<FhirExtension>?
modifierExtension May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and managable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions.Modifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself).
no setterinherited
note → List<Annotation>?
note Any notes capture with the analysis event.
no setterinherited
output → List<GenomicStudyOutput>?
output Outputs for the analysis event.
no setterinherited
performer → List<GenomicStudyPerformer>?
performer Performer for the analysis event.
no setterinherited
protocolPerformed → Reference?
protocolPerformed The protocol that was performed for the analysis event.
no setterinherited
regionsCalled → List<Reference>?
regionsCalled Genomic regions actually called in the analysis event (BED file).
no setterinherited
regionsStudied → List<Reference>?
regionsStudied The genomic regions to be studied in the analysis (BED file).
no setterinherited
runtimeType → Type
A representation of the runtime type of the object.
no setterinherited
specimen → List<Reference>?
specimen The specimen used in the analysis event.
no setterinherited
title → String?
title Name of the analysis event (human friendly).
no setterinherited
titleElement → Element?
titleElement ("_title") Extensions for title
no setterinherited

Methods

noSuchMethod(Invocation invocation) → dynamic
Invoked when a nonexistent method or property is accessed.
inherited
toJson() → Map<String, dynamic>
inherited
toJsonString() → String
Another convenience method because more and more I'm transmitting FHIR data as a String and not a Map
toString() → String
A string representation of this object.
inherited
toYaml() → String
Produces a Yaml formatted String version of the object

Operators

operator ==(Object other) → bool
The equality operator.
inherited