MolecularSequenceVariant class
MolecularSequenceVariant Raw data describing a biological sequence.
- Annotations
-
- @freezed
Constructors
-
MolecularSequenceVariant({@JsonKey(name: 'id') FhirId? fhirId, @JsonKey(name: 'extension') List<
FhirExtension> ? extension_, List<FhirExtension> ? modifierExtension, FhirInteger? start, @JsonKey(name: '_start') Element? startElement, FhirInteger? end, @JsonKey(name: '_end') Element? endElement, String? observedAllele, @JsonKey(name: '_observedAllele') Element? observedAlleleElement, String? referenceAllele, @JsonKey(name: '_referenceAllele') Element? referenceAlleleElement, String? cigar, @JsonKey(name: '_cigar') Element? cigarElement, Reference? variantPointer}) -
MolecularSequenceVariant Raw data describing a biological sequence.
constfactory
-
MolecularSequenceVariant.fromJson(Map<
String, dynamic> json) -
Factory constructor, accepts Map<String, dynamic> as an argument
factory
- MolecularSequenceVariant.fromJsonString(String source)
-
Acts like a constructor, returns a MolecularSequenceVariant, accepts a
String as an argument, mostly because I got tired of typing it out
factory
- MolecularSequenceVariant.fromYaml(dynamic yaml)
-
Factory constructor that accepts a String in YAML format as an argument
factory
Properties
- cigar → String?
-
cigar Extended CIGAR string for aligning the sequence with reference
bases. See detailed documentation
(http://support.illumina.com/help/SequencingAnalysisWorkflow/Content/Vault/Informatics/Sequencing_Analysis/CASAVA/swSEQ_mCA_ExtendedCIGARFormat.htm).
no setterinherited
- cigarElement → Element?
-
cigarElement Extensions for cigar
no setterinherited
-
copyWith
→ $MolecularSequenceVariantCopyWith<
MolecularSequenceVariant> -
no setterinherited
- end → FhirInteger?
-
end End position of the variant on the reference sequence. If the
coordinate system is 0-based then end is exclusive and does not include
the last position. If the coordinate system is 1-base, then end is
inclusive and includes the last position.
no setterinherited
- endElement → Element?
-
endElement Extensions for end
no setterinherited
-
extension_
→ List<
FhirExtension> ? -
extension_ May be used to represent additional information that is not
part of the basic definition of the element. To make the use of extensions
safe and manageable, there is a strict set of governance applied to the
definition and use of extensions. Though any implementer can define an
extension, there is a set of requirements that SHALL be met as part of the
definition of the extension.
no setterinherited
- fhirId → FhirId?
-
id Unique id for the element within a resource (for internal
references). This may be any string value that does not contain spaces.
no setterinherited
- hashCode → int
-
The hash code for this object.
no setterinherited
-
modifierExtension
→ List<
FhirExtension> ? -
modifierExtension May be used to represent additional information that
is not part of the basic definition of the element and that modifies the
understanding of the element in which it is contained and/or the
understanding of the containing element's descendants. Usually modifier
elements provide negation or qualification. To make the use of extensions
safe and manageable, there is a strict set of governance applied to the
definition and use of extensions. Though any implementer can define an
extension, there is a set of requirements that SHALL be met as part of the
definition of the extension. Applications processing a resource are
required to check for modifier extensions.
Modifier extensions SHALL NOT change the meaning of any elements on
Resource or DomainResource (including cannot change the meaning of
modifierExtension itself).
no setterinherited
- observedAllele → String?
-
observedAllele An allele is one of a set of coexisting sequence
variants of a gene
(SO:0001023).
Nucleotide(s)/amino acids from start position of sequence to stop position
of sequence on the positive (+) strand of the observed sequence. When the
sequence type is DNA, it should be the sequence on the positive (+)
strand. This will lay in the range between variant.start and variant.end.
no setterinherited
- observedAlleleElement → Element?
-
observedAlleleElement Extensions for observedAllele
no setterinherited
- referenceAllele → String?
-
referenceAllele An allele is one of a set of coexisting sequence
variants of a gene
(SO:0001023).
Nucleotide(s)/amino acids from start position of sequence to stop position
of sequence on the positive (+) strand of the reference sequence. When the
sequence type is DNA, it should be the sequence on the positive (+)
strand. This will lay in the range between variant.start and variant.end.
no setterinherited
- referenceAlleleElement → Element?
-
referenceAlleleElement Extensions for referenceAllele
no setterinherited
- runtimeType → Type
-
A representation of the runtime type of the object.
no setterinherited
- start → FhirInteger?
-
start Start position of the variant on the reference sequence. If the
coordinate system is either 0-based or 1-based, then start position is
inclusive.
no setterinherited
- startElement → Element?
-
startElement Extensions for start
no setterinherited
- variantPointer → Reference?
-
variantPointer A pointer to an Observation containing variant
information.
no setterinherited
Methods
-
noSuchMethod(
Invocation invocation) → dynamic -
Invoked when a nonexistent method or property is accessed.
inherited
-
toJson(
) → Map< String, dynamic> -
inherited
-
toJsonString(
) → String - Another convenience method because more and more I'm transmitting FHIR data as a String and not a Map
-
toString(
) → String -
A string representation of this object.
inherited
-
toYaml(
) → String - Produces a Yaml formatted String version of the object
Operators
-
operator ==(
Object other) → bool -
The equality operator.
inherited