MolecularSequenceVariant class

MolecularSequenceVariant Raw data describing a biological sequence.

Annotations
  • @freezed

Constructors

MolecularSequenceVariant({@JsonKey(name: 'id') FhirId? fhirId, @JsonKey(name: 'extension') List<FhirExtension>? extension_, List<FhirExtension>? modifierExtension, FhirInteger? start, @JsonKey(name: '_start') Element? startElement, FhirInteger? end, @JsonKey(name: '_end') Element? endElement, String? observedAllele, @JsonKey(name: '_observedAllele') Element? observedAlleleElement, String? referenceAllele, @JsonKey(name: '_referenceAllele') Element? referenceAlleleElement, String? cigar, @JsonKey(name: '_cigar') Element? cigarElement, Reference? variantPointer})
MolecularSequenceVariant Raw data describing a biological sequence.
const
factory
MolecularSequenceVariant.fromJson(Map<String, dynamic> json)
Factory constructor, accepts Map<String, dynamic> as an argument
factory
MolecularSequenceVariant.fromJsonString(String source)
Acts like a constructor, returns a MolecularSequenceVariant, accepts a String as an argument, mostly because I got tired of typing it out
factory
MolecularSequenceVariant.fromYaml(dynamic yaml)
Factory constructor that accepts a String in YAML format as an argument
factory

Properties

cigar → String?
cigar Extended CIGAR string for aligning the sequence with reference bases. See detailed documentation (http://support.illumina.com/help/SequencingAnalysisWorkflow/Content/Vault/Informatics/Sequencing_Analysis/CASAVA/swSEQ_mCA_ExtendedCIGARFormat.htm).
no setterinherited
cigarElement → Element?
cigarElement Extensions for cigar
no setterinherited
copyWith → $MolecularSequenceVariantCopyWith<MolecularSequenceVariant>
no setterinherited
end → FhirInteger?
end End position of the variant on the reference sequence. If the coordinate system is 0-based then end is exclusive and does not include the last position. If the coordinate system is 1-base, then end is inclusive and includes the last position.
no setterinherited
endElement → Element?
endElement Extensions for end
no setterinherited
extension_ → List<FhirExtension>?
extension_ May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.
no setterinherited
fhirId → FhirId?
id Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.
no setterinherited
hashCode → int
The hash code for this object.
no setterinherited
modifierExtension → List<FhirExtension>?
modifierExtension May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions. Modifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself).
no setterinherited
observedAllele → String?
observedAllele An allele is one of a set of coexisting sequence variants of a gene (SO:0001023). Nucleotide(s)/amino acids from start position of sequence to stop position of sequence on the positive (+) strand of the observed sequence. When the sequence type is DNA, it should be the sequence on the positive (+) strand. This will lay in the range between variant.start and variant.end.
no setterinherited
observedAlleleElement → Element?
observedAlleleElement Extensions for observedAllele
no setterinherited
referenceAllele → String?
referenceAllele An allele is one of a set of coexisting sequence variants of a gene (SO:0001023). Nucleotide(s)/amino acids from start position of sequence to stop position of sequence on the positive (+) strand of the reference sequence. When the sequence type is DNA, it should be the sequence on the positive (+) strand. This will lay in the range between variant.start and variant.end.
no setterinherited
referenceAlleleElement → Element?
referenceAlleleElement Extensions for referenceAllele
no setterinherited
runtimeType → Type
A representation of the runtime type of the object.
no setterinherited
start → FhirInteger?
start Start position of the variant on the reference sequence. If the coordinate system is either 0-based or 1-based, then start position is inclusive.
no setterinherited
startElement → Element?
startElement Extensions for start
no setterinherited
variantPointer → Reference?
variantPointer A pointer to an Observation containing variant information.
no setterinherited

Methods

noSuchMethod(Invocation invocation) → dynamic
Invoked when a nonexistent method or property is accessed.
inherited
toJson() → Map<String, dynamic>
inherited
toJsonString() → String
Another convenience method because more and more I'm transmitting FHIR data as a String and not a Map
toString() → String
A string representation of this object.
inherited
toYaml() → String
Produces a Yaml formatted String version of the object

Operators

operator ==(Object other) → bool
The equality operator.
inherited