MolecularSequenceStartingSequence constructor

const MolecularSequenceStartingSequence({
  1. @JsonKey(name: 'id') String? fhirId,
  2. @JsonKey(name: 'extension') List<FhirExtension>? extension_,
  3. List<FhirExtension>? modifierExtension,
  4. CodeableConcept? genomeAssembly,
  5. CodeableConcept? chromosome,
  6. CodeableConcept? sequenceCodeableConcept,
  7. String? sequenceString,
  8. @JsonKey(name: '_sequenceString') Element? sequenceStringElement,
  9. Reference? sequenceReference,
  10. FhirInteger? windowStart,
  11. @JsonKey(name: '_windowStart') Element? windowStartElement,
  12. FhirInteger? windowEnd,
  13. @JsonKey(name: '_windowEnd') Element? windowEndElement,
  14. FhirCode? orientation,
  15. @JsonKey(name: '_orientation') Element? orientationElement,
  16. FhirCode? strand,
  17. @JsonKey(name: '_strand') Element? strandElement,
})

MolecularSequenceStartingSequence Representation of a molecular sequence.

id Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.

extension_ ("extension") May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and managable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.

modifierExtension May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and managable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions.Modifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself).

genomeAssembly The genome assembly used for starting sequence, e.g. GRCh38.

chromosome Structural unit composed of a nucleic acid molecule which controls its own replication through the interaction of specific proteins at one or more origins of replication (SO:0000340).

sequenceCodeableConcept The reference sequence that represents the starting sequence.

sequenceString The reference sequence that represents the starting sequence.

sequenceStringElement ("_sequenceString") Extensions for sequenceString

sequenceReference The reference sequence that represents the starting sequence.

windowStart Start position of the window on the starting sequence. This value should honor the rules of the coordinateSystem.

windowStartElement ("_windowStart") Extensions for windowStart

windowEnd End position of the window on the starting sequence. This value should honor the rules of the coordinateSystem.

windowEndElement ("_windowEnd") Extensions for windowEnd

orientation A relative reference to a DNA strand based on gene orientation. The strand that contains the open reading frame of the gene is the "sense" strand, and the opposite complementary strand is the "antisense" strand.

orientationElement ("_orientation") Extensions for orientation

strand An absolute reference to a strand. The Watson strand is the strand whose 5'-end is on the short arm of the chromosome, and the Crick strand as the one whose 5'-end is on the long arm.

strandElement ("_strand") Extensions for strand

Implementation

const factory MolecularSequenceStartingSequence({
  /// [id] Unique id for the element within a resource (for internal
  ///  references). This may be any string value that does not contain spaces.
  @JsonKey(name: 'id') String? fhirId,

  /// [extension_] ("extension") May be used to represent additional
  ///  information that is not part of the basic definition of the element.
  ///  To make the use of extensions safe and managable, there is a strict
  ///  set of governance applied to the definition and use of extensions.
  ///  Though any implementer can define an extension, there is a set of
  ///  requirements that SHALL be met as part of the definition of the
  ///  extension.
  @JsonKey(name: 'extension') List<FhirExtension>? extension_,

  /// [modifierExtension] May be used to represent additional information
  ///  that is not part of the basic definition of the element and that
  ///  modifies the understanding of the element in which it is contained
  ///  and/or the understanding of the containing element's descendants.
  ///  Usually modifier elements provide negation or qualification. To make
  ///  the use of extensions safe and managable, there is a strict set of
  ///  governance applied to the definition and use of extensions. Though any
  ///  implementer can define an extension, there is a set of requirements
  ///  that SHALL be met as part of the definition of the extension.
  ///  Applications processing a resource are required to check for modifier
  ///  extensions.Modifier extensions SHALL NOT change the meaning of any
  ///  elements on Resource or DomainResource (including cannot change the
  ///  meaning of modifierExtension itself).
  List<FhirExtension>? modifierExtension,

  /// [genomeAssembly] The genome assembly used for starting sequence, e.g.
  ///  GRCh38.
  CodeableConcept? genomeAssembly,

  /// [chromosome] Structural unit composed of a nucleic acid molecule which
  ///  controls its own replication through the interaction of specific
  ///  proteins at one or more origins of replication
  ///  ([SO:0000340](http://www.sequenceontology.org/browser/current_svn/term/SO:0000340)).
  ///
  CodeableConcept? chromosome,

  /// [sequenceCodeableConcept] The reference sequence that represents the
  ///  starting sequence.
  CodeableConcept? sequenceCodeableConcept,

  /// [sequenceString] The reference sequence that represents the starting
  ///  sequence.
  String? sequenceString,

  /// [sequenceStringElement] ("_sequenceString") Extensions for
  ///  sequenceString
  @JsonKey(name: '_sequenceString') Element? sequenceStringElement,

  /// [sequenceReference] The reference sequence that represents the starting
  ///  sequence.
  Reference? sequenceReference,

  /// [windowStart] Start position of the window on the starting sequence.
  ///  This value should honor the rules of the coordinateSystem.
  FhirInteger? windowStart,

  /// [windowStartElement] ("_windowStart") Extensions for windowStart
  @JsonKey(name: '_windowStart') Element? windowStartElement,

  /// [windowEnd] End position of the window on the starting sequence. This
  ///  value should honor the rules of the  coordinateSystem.
  FhirInteger? windowEnd,

  /// [windowEndElement] ("_windowEnd") Extensions for windowEnd
  @JsonKey(name: '_windowEnd') Element? windowEndElement,

  /// [orientation] A relative reference to a DNA strand based on gene
  ///  orientation. The strand that contains the open reading frame of the
  ///  gene is the "sense" strand, and the opposite complementary strand is
  ///  the "antisense" strand.
  FhirCode? orientation,

  /// [orientationElement] ("_orientation") Extensions for orientation
  @JsonKey(name: '_orientation') Element? orientationElement,

  /// [strand] An absolute reference to a strand. The Watson strand is the
  ///  strand whose 5'-end is on the short arm of the chromosome, and the
  ///  Crick strand as the one whose 5'-end is on the long arm.
  FhirCode? strand,

  /// [strandElement] ("_strand") Extensions for strand
  @JsonKey(name: '_strand') Element? strandElement,
}) = _MolecularSequenceStartingSequence;