seq library

Classes

Seq

Properties

log Logger
final

Functions

alignIO() → void
countFa(File file) int
Count number of records in fasta file. [...]
countFq(File file) int
Count number of records in fasta file [...]
file2Stream(File file, String format, {bool isGzip: false}) Stream<Seq>
Read file as Stream
seqIO({String inputFile, String outputFile, bool inputCompressed, String inputFormat, String outputFormat, bool outputCompressed, int fastaLineLength, int sample: 0, int randomSeed, String filterNames, String filterMotif, int trimStart, int trimEnd, bool revCom: false, bool verbose: false, bool overwrite: false}) → void
Read and write sequences file. [...]
stream2File(Stream<Seq> seqStream, File outfile, String outputFormat, {int lineLength: 0}) → void
Write Stream as file